Research workbench
X-ray crystal structure of polymerase domain of the bacteriophage N4 virion RNA polymerase
Analyse X-ray crystal structure of polymerase domain of the bacteriophage N4 virion RNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PO4
- Type
- protein
- Length
- 1,094 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Virion RNA polymerase
- EC
- 2.7.7.6
- UniProt
- Q859P9
- Pockets
- 14 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Virion RNA polymerase (EC 2.7.7.6) | protein | 1094 | 57% helix, 11% strand | Q859P9 |
Pockets
14 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 776 | 0.85 | 0.89 | 87 | empty |
| 2 | 277 | 0.79 | 0.91 | 44 | empty |
| 3 | 614 | 0.69 | 0.78 | 53 | empty |
| 4 | 91 | 0.55 | 0.86 | 17 | empty |
| 5 | 119 | 0.48 | 0.79 | 20 | empty |
Compared structures
- 2PO4 · X-ray crystal structure of polymerase domain of the bacteriophage N4 virion RNA polymerase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q859P9
- Elsewhere: RCSB PDB 2PO4 · PDBe 2PO4 · UniProt Q859P9
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