Research workbench
Crystal structure of a ribosomal RNA methyltransferase, putative, from plasmodium falciparum (PF13_0052).
Analyse Crystal structure of a ribosomal RNA methyltransferase, putative, from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PLW
- Type
- protein
- Length
- 182 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal RNA methyltransferase, putative
- EC
- 2.1.1.-
- UniProt
- Q8IEL9
- Ligands
- SAM, SO4
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA methyltransferase, putative (EC 2.1.1.-) | protein | 182 | 34% helix, 27% strand | Q8IEL9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 141 | 0.48 | 0.78 | 30 | SAM |
Compared structures
- 2PLW · Crystal structure of a ribosomal RNA methyltransferase, putative, from Plasmodium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IEL9
- Elsewhere: RCSB PDB 2PLW · PDBe 2PLW · UniProt Q8IEL9
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