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Crystal structure of UPF0341 protein yhiq from salmonella typhimurium, northeast structural genomics consortium target STR221
Analyse Crystal structure of UPF0341 protein yhiq from salmonella typhimurium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PKW
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0341 protein yhiq
- UniProt
- Q9X6G2
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0341 protein yhiq | protein | 254 | 33% helix, 22% strand | Q9X6G2 |
Ligands and binding sites
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 374 | 0.70 | 0.82 | 53 | TRS |
| 2 | 86 | 0.41 | 0.78 | 14 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 2PKW · Crystal structure of UPF0341 protein yhiQ from Salmonella typhimurium, Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9X6G2 · AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase J… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X6G2
- Elsewhere: RCSB PDB 2PKW · PDBe 2PKW · UniProt Q9X6G2
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