Research workbench
The VPS27/HSE1 complex is a gat domain-based scaffold for ubiquitin- dependent sorting
Analyse The VPS27/HSE1 complex is a gat domain-based scaffold for ubiquitin- dependent… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PJW
- Type
- protein
- Length
- 179 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein YHL002W; Vacuolar protein sorting-associated protein 27
- UniProt
- P38753, P40343
Structure
x-ray diffraction · 2 distinct chains · 82% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | Uncharacterized protein YHL002W | protein | 88 | 83% helix, 0% strand | P38753 |
| V | Vacuolar protein sorting-associated protein 27 | protein | 91 | 81% helix, 0% strand | P40343 |
Interfaces
1 interface between chains.
- H–V · 2305 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 2PJW · The Vps27/Hse1 complex is a GAT domain-based scaffold for ubiquitin-dependent sorting · the same entry in another collection · chain V against V, TM-score 1.00
- P38753 · AlphaFold monomer V2.0 prediction for class E vacuolar protein- sorting machinery protein… · a predicted model of the same protein · chain H against A, TM-score 0.92
- P40343 · AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 27… · a predicted model of the same protein · chain V against A, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38753
- Every structure of UniProt P40343
- Elsewhere: RCSB PDB 2PJW · PDBe 2PJW · UniProt P38753 · UniProt P40343
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