Research workbench
Crystal structure of UPF0317 protein PSPTO_5379 from pseudomonas syringae pv. tomato. northeast structural genomics target PSR181
Analyse Crystal structure of UPF0317 protein PSPTO_5379 from pseudomonas syringae pv.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PIF
- Type
- protein
- Length
- 505 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0317 protein PSPTO_5379
- UniProt
- Q87UC6
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0317 protein PSPTO_5379 | protein | 252 | 27% helix, 27% strand | Q87UC6 |
| B | UPF0317 protein PSPTO_5379 | protein | 253 | 22% helix, 27% strand | Q87UC6 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 585 | 0.79 | 0.85 | 55 | empty |
| 2 | 508 | 0.79 | 0.86 | 51 | empty |
| 3 | 143 | 0.44 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 741 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 modified (engineered).
Compared structures
- 2PIF · Crystal structure of UPF0317 protein PSPTO_5379 from Pseudomonas syringae pv. tomato.… · the same entry in another collection · chain A against A, TM-score 1.00
- Q87UC6 · AlphaFold monomer V2.0 prediction for putative hydro-lyase PSPTO_5379 (Q87UC6) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87UC6
- Elsewhere: RCSB PDB 2PIF · PDBe 2PIF · UniProt Q87UC6
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