Research workbench
Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2FE-2S]
Analyse Phthalate dioxygenase reductase: a modular structure for electron transfer from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PIA
- Type
- protein
- Length
- 321 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phthalate dioxygenase reductase
- EC
- 1.18.1.-
- UniProt
- P33164
- Ligands
- FMN, FES
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phthalate dioxygenase reductase (EC 1.18.1.-) | protein | 321 | 17% helix, 30% strand | P33164 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 686 | 0.77 | 0.82 | 76 | FMN |
| 2 | 95 | 0.42 | 0.78 | 18 | empty |
| 3 | 57 | 0.29 | 0.75 | 23 | empty |
Compared structures
- 2PIA · Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine… · the same entry in another collection · chain A against A, TM-score 1.00
- P33164 · AlphaFold monomer V2.0 prediction for phthalate dioxygenase reductase (P33164) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33164
- Elsewhere: RCSB PDB 2PIA · PDBe 2PIA · UniProt P33164
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