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The refined three-dimensional structure of pectate lyase C from erwinia chrysanthemi at 2.2 ångströms resolution: implications for an enzymatic mechanism

Analyse The refined three-dimensional structure of pectate lyase C from erwinia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2PEC
Type: protein
Length: 352 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pectate lyase C
EC: 4.2.2.2
UniProt: P11073
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pectate lyase C (EC 4.2.2.2)	protein	352	13% helix, 34% strand	P11073

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	81	0.32	0.74	19	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

2PEC · The refined three-dimensional structure of pectate lyase C from erwinia chrysanthemi at… · the same entry in another collection · chain A against A, TM-score 1.00
P11073 · AlphaFold monomer V2.0 prediction for pectate lyase C (P11073) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11073
Elsewhere: RCSB PDB 2PEC · PDBe 2PEC · UniProt P11073

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