Research workbench
9 ångström resolution cryo-EM reconstruction structure of semliki forest virus (sfv) and fitting of the capsid protein structure in the EM density
Analyse 9 ångström resolution cryo-EM reconstruction structure of semliki forest virus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1DYL
- Type
- protein
- Length
- 596 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleocapsid protein
- UniProt
- P03315
Structure
electron microscopy · 1 distinct chain · 7% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Nucleocapsid protein | protein | 149 | 7% helix, 46% strand | P03315 |
Interfaces
2 interfaces between chains.
- B–D · 696 Ų buried · 62 hydrogen bonds · protein-protein
- B–C · 505 Ų buried · 37 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide, 2 isopeptide (disulfide, isopeptide).
Compared structures
- 1DYL · 9 ångström resolution cryo-EM reconstruction structure of semliki forest virus (sfv) and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03315
- Elsewhere: RCSB PDB 1DYL · PDBe 1DYL · UniProt P03315
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.