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Crystal structure of molybdenum cofactor biosynthesis (AQ_061) from aquifex aeolicus VF5
Analyse Crystal structure of molybdenum cofactor biosynthesis (AQ_061) from aquifex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PBQ
- Type
- protein
- Length
- 511 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Molybdenum cofactor biosynthesis mog
- UniProt
- O66472
- Pockets
- 5 · best druggability 0.68
Structure
x-ray diffraction · 3 distinct chains · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Molybdenum cofactor biosynthesis mog | protein | 174 | 45% helix, 19% strand | O66472 |
| B | Molybdenum cofactor biosynthesis mog | protein | 165 | 44% helix, 20% strand | O66472 |
| C | Molybdenum cofactor biosynthesis mog | protein | 172 | 45% helix, 19% strand | O66472 |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 480 | 0.68 | 0.79 | 35 | empty |
| 2 | 479 | 0.64 | 0.77 | 44 | empty |
| 3 | 84 | 0.62 | 0.89 | 18 | empty |
| 4 | 383 | 0.60 | 0.77 | 44 | empty |
| 5 | 220 | 0.55 | 0.78 | 31 | empty |
Interfaces
3 interfaces between chains.
- A–C · 784 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 751 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 744 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 2PBQ · Crystal structure of molybdenum cofactor biosynthesis (aq_061) From aquifex aeolicus VF5 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O66472
- Elsewhere: RCSB PDB 2PBQ · PDBe 2PBQ · UniProt O66472
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