Research workbench
The crystal structure of a protein of unknown function from corynebacterium glutamicum atcc 13032
Analyse The crystal structure of a protein of unknown function from corynebacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P90
- Type
- protein
- Length
- 806 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein CGL1923
- UniProt
- Q8NP93
- Pockets
- 13 · best druggability 0.60
Structure
x-ray diffraction · 3 distinct chains · 41% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein CGL1923 | protein | 269 | 41% helix, 25% strand | Q8NP93 |
| B | Hypothetical protein CGL1923 | protein | 271 | 41% helix, 25% strand | Q8NP93 |
| C | Hypothetical protein CGL1923 | protein | 266 | 41% helix, 27% strand | Q8NP93 |
Pockets
13 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 274 | 0.60 | 0.79 | 37 | empty |
| 2 | 321 | 0.60 | 0.77 | 34 | empty |
| 3 | 65 | 0.57 | 0.89 | 12 | empty |
| 4 | 266 | 0.54 | 0.76 | 30 | empty |
| 5 | 153 | 0.45 | 0.76 | 23 | empty |
Interfaces
3 interfaces between chains.
- A–C · 1220 Ų buried · 35 hydrogen bonds · protein-protein
- B–C · 1205 Ų buried · 33 hydrogen bonds · protein-protein
- A–B · 1202 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
- 2P90 · The crystal structure of a protein of unknown function from Corynebacterium glutamicum… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NP93
- Elsewhere: RCSB PDB 2P90 · PDBe 2P90 · UniProt Q8NP93
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