Research workbench
Crystal structure of phenolic acid decarboxylase (2635953) from bacillus subtilis at 1.36 a resolution
Analyse Crystal structure of phenolic acid decarboxylase (2635953) from bacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P8G
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phenolic acid decarboxylase
- EC
- 4.1.1.-
- UniProt
- O07006
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phenolic acid decarboxylase (EC 4.1.1.-) | protein | 162 | 22% helix, 43% strand | O07006 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 125 | 0.72 | 0.92 | 30 | EDO |
| 2 | 77 | 0.38 | 0.78 | 18 | EDO |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 2P8G · Crystal structure of phenolic acid decarboxylase (2635953) from Bacillus subtilis at 1.36… · the same entry in another collection · chain A against A, TM-score 1.00
- O07006 · AlphaFold monomer V2.0 prediction for phenolic acid decarboxylase padc (O07006) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O07006
- Elsewhere: RCSB PDB 2P8G · PDBe 2P8G · UniProt O07006
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