Research workbench
Apo structure of the HEL308 superfamily 2 helicase
Analyse Apo structure of the HEL308 superfamily 2 helicase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P6U
- Type
- protein
- Length
- 671 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AFUHEL308 helicase
- Ligands
- PO4
- Pockets
- 4 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AFUHEL308 helicase | protein | 671 | 51% helix, 11% strand | — |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 10 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 754 | 0.77 | 0.82 | 70 | PO4 |
| 2 | 139 | 0.55 | 0.81 | 19 | empty |
| 3 | 191 | 0.44 | 0.74 | 20 | PO4 |
| 4 | 82 | 0.34 | 0.75 | 18 | empty |
Compared structures
- 2P6U · Apo structure of the Hel308 superfamily 2 helicase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2P6U · PDBe 2P6U
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