Research workbench
The E. COLI C3393 protein is a component of the type VI secretion system and exhibits structural similarity to T4 bacteriophage tail proteins GP27 and GP5
Analyse The E. COLI C3393 protein is a component of the type VI secretion system and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P5Z
- Type
- protein
- Length
- 361 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type VI secretion system component
- UniProt
- Q8FED2
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 15% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Type VI secretion system component | protein | 361 | 15% helix, 43% strand | Q8FED2 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.52 | 0.85 | 23 | empty |
| 2 | 137 | 0.44 | 0.76 | 30 | empty |
| 3 | 69 | 0.33 | 0.75 | 18 | empty |
| 4 | 55 | 0.29 | 0.75 | 14 | empty |
Compared structures
- 2P5Z · The E. coli c3393 protein is a component of the type VI secretion system and exhibits… · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8FED2
- Elsewhere: RCSB PDB 2P5Z · PDBe 2P5Z · UniProt Q8FED2
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