Research workbench
Crystal structure of a putative lactonase of the smp- 30/GLUCONOLACTONASE/LRE-like region family (NPUN_F0524) from nostoc punctiforme pcc 73102 at 1.90 a resolution
Analyse Crystal structure of a putative lactonase of the smp… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P4O
- Type
- protein
- Length
- 302 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- Pockets
- 3 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 302 | 2% helix, 48% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.59 | 0.86 | 30 | empty |
| 2 | 195 | 0.55 | 0.79 | 27 | ACT |
| 3 | 99 | 0.36 | 0.74 | 19 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 2P4O · Crystal structure of a putative lactonase of the smp-30/GLUCONOLACTONASE/LRE-like region… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2P4O · PDBe 2P4O
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