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Crystal structure of AQ1208 from aquifex aeolicus
Analyse Crystal structure of AQ1208 from aquifex aeolicus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P3E
- Type
- protein
- Length
- 801 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Diaminopimelate decarboxylase
- EC
- 4.1.1.20
- UniProt
- O67262
- Pockets
- 9 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Diaminopimelate decarboxylase (EC 4.1.1.20) | protein | 398 | 35% helix, 27% strand | O67262 |
| B | Diaminopimelate decarboxylase (EC 4.1.1.20) | protein | 403 | 35% helix, 28% strand | O67262 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 191 | 0.57 | 0.80 | 38 | empty |
| 2 | 180 | 0.51 | 0.78 | 26 | empty |
| 3 | 172 | 0.49 | 0.77 | 26 | empty |
| 4 | 149 | 0.48 | 0.78 | 30 | empty |
| 5 | 68 | 0.41 | 0.80 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 3603 Ų buried · 55 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67262
- Elsewhere: RCSB PDB 2P3E · PDBe 2P3E · UniProt O67262
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