Research workbench
Crystal structure of pyrococcus abyssi protein homologue of saccharomyces cerevisiae NIP7P
Analyse Crystal structure of pyrococcus abyssi protein homologue of saccharomyces… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P38
- Type
- protein
- Length
- 310 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein involved in ribosomal biogenesis
- UniProt
- Q9V219
- Pockets
- 4 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Protein involved in ribosomal biogenesis | protein | 155 | 23% helix, 40% strand | Q9V219 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.34 | 0.75 | 24 | empty |
| 2 | 60 | 0.31 | 0.76 | 15 | empty |
| 3 | 70 | 0.30 | 0.73 | 18 | empty |
| 4 | 54 | 0.28 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 655 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2P38 · Crystal Structure of Pyrococcus Abyssi Protein Homologue of Saccharomyces Cerevisiae NIP7P · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V219
- Elsewhere: RCSB PDB 2P38 · PDBe 2P38 · UniProt Q9V219
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