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The solution structure of [D(CGC)R(AAA)D(TTTGCG)]2: hybrid junctions flanked by DNA duplexes

Analyse The solution structure of [D(CGC)R(AAA)D(TTTGCG)]2: hybrid junctions flanked by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1DXN
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA/RNA (5'-D(*CP*GP*CP)-R(*AP*AP*AP)-D(*TP*TP*TP*GP*CP*G)- 3')

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA/RNA (5'-D(CPGPCP)-R(APAPAP)-D(TPTPTPGPCPG)- 3')	dna	12	—	—

Interfaces

1 interface between chains.

A–B · 595 Å² buried · 82 hydrogen bonds · nucleic-nucleic

Compared structures

1DXN · The Solution Structure of [d(CGC)r(aaa)d(TTTGCG)]2: Hybrid Junctions Flanked by DNA… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1DXN · PDBe 1DXN

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