Research workbench
Crystal structure of a putative xylanase from bacteroides fragilis
Analyse Crystal structure of a putative xylanase from bacteroides fragilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P1G
- Type
- protein
- Length
- 459 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative xylanase
- UniProt
- Q64UP6
- Pockets
- 5 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative xylanase | protein | 229 | 35% helix, 22% strand | Q64UP6 |
| B | Putative xylanase | protein | 230 | 37% helix, 22% strand | Q64UP6 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1049 | 0.82 | 0.83 | 86 | empty |
| 2 | 348 | 0.67 | 0.81 | 29 | empty |
| 3 | 62 | 0.49 | 0.85 | 17 | empty |
| 4 | 74 | 0.32 | 0.75 | 22 | empty |
| 5 | 62 | 0.30 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 675 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 2P1G · Crystal structure of a putative xylanase from Bacteroides fragilis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q64UP6
- Elsewhere: RCSB PDB 2P1G · PDBe 2P1G · UniProt Q64UP6
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