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Crystal structure of Q88YI3_LACPL from lactobacillus plantarum. northeast structural genomics consortium target LPR6
Analyse Crystal structure of Q88YI3_LACPL from lactobacillus plantarum. northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2P0Y
- Type
- protein
- Length
- 240 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein LP_0780
- UniProt
- Q88YI3
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein LP_0780 | protein | 240 | 40% helix, 18% strand | Q88YI3 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.43 | 0.82 | 14 | empty |
| 2 | 115 | 0.36 | 0.73 | 24 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 2P0Y · Crystal structure of Q88YI3_LACPL from Lactobacillus plantarum. Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88YI3
- Elsewhere: RCSB PDB 2P0Y · PDBe 2P0Y · UniProt Q88YI3
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