Research workbench
Crystal structure of unknown function protein VPA0057 from vibrio parahaemolyticus (targeted domain 2-94)
Analyse Crystal structure of unknown function protein VPA0057 from vibrio… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2OYZ
- Type
- protein
- Length
- 94 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0345 protein VPA0057
- UniProt
- Q87K41
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 66% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0345 protein VPA0057 | protein | 94 | 3% helix, 66% strand | Q87K41 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.49 | 0.79 | 23 | empty |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 2OYZ · Crystal structure of unknown function protein VPA0057 from Vibrio parahaemolyticus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q87K41 · AlphaFold monomer V2.0 prediction for PYRIMIDINE/PURINE nucleoside phosphorylase (Q87K41) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87K41
- Elsewhere: RCSB PDB 2OYZ · PDBe 2OYZ · UniProt Q87K41
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.