Research workbench
Crystal structure of bordetella pertussis holo ferric binding protein with bound synergistic carbonate anion
Analyse Crystal structure of bordetella pertussis holo ferric binding protein with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2OWT
- Type
- protein
- Length
- 315 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative iron binding protein
- UniProt
- Q7VXW9
- Ligands
- FE, CO3
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative iron binding protein | protein | 315 | 47% helix, 19% strand | Q7VXW9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 193 | 0.51 | 0.77 | 41 | CO3 |
| 2 | 68 | 0.30 | 0.73 | 19 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 2OWT · Crystal structure of Bordetella pertussis holo ferric binding protein with bound… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7VXW9
- Elsewhere: RCSB PDB 2OWT · PDBe 2OWT · UniProt Q7VXW9
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