Research workbench
Structural genomics, the crystal structure of a putative pts iia domain from streptococcus pyogenes M1 gas
Analyse Structural genomics, the crystal structure of a putative pts iia domain from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2OQT
- Type
- protein
- Length
- 612 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein SPY0176
- UniProt
- Q9A1N7
- Pockets
- 8 · best druggability 0.70
Structure
x-ray diffraction · 4 distinct chains · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein SPY0176 | protein | 151 | 44% helix, 19% strand | Q9A1N7 |
| B | Hypothetical protein SPY0176 | protein | 151 | 44% helix, 21% strand | Q9A1N7 |
| C | Hypothetical protein SPY0176 | protein | 154 | 46% helix, 18% strand | Q9A1N7 |
| D | Hypothetical protein SPY0176 | protein | 156 | 46% helix, 18% strand | Q9A1N7 |
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 746 | 0.70 | 0.77 | 62 | empty |
| 2 | 92 | 0.60 | 0.87 | 26 | empty |
| 3 | 70 | 0.44 | 0.81 | 22 | empty |
| 4 | 153 | 0.44 | 0.75 | 25 | empty |
| 5 | 117 | 0.39 | 0.75 | 23 | empty |
Interfaces
4 interfaces between chains.
- C–D · 957 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 709 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 214 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 52 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 20 modified (engineered).
Compared structures
- 2OQT · Structural Genomics, the crystal structure of a putative PTS IIA domain from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9A1N7
- Elsewhere: RCSB PDB 2OQT · PDBe 2OQT · UniProt Q9A1N7
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