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Crystal structure of putative L-alanine-dl-glutamate epimerase from burkholderia xenovorans strain LB400

Analyse Crystal structure of putative L-alanine-dl-glutamate epimerase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2OO6
Type: protein
Length: 393 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative L-alanine-dl-glutamate epimerase
UniProt: Q13PB7
Ligands: SO4
Pockets: 4 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative L-alanine-dl-glutamate epimerase	protein	393	40% helix, 19% strand	Q13PB7

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	173	0.72	0.90	28	SO4
2	79	0.55	0.86	25	empty
3	111	0.47	0.79	17	empty
4	53	0.28	0.75	13	empty

Compared structures

2OO6 · Crystal structure of putative L-alanine-DL-glutamate epimerase from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13PB7
Elsewhere: RCSB PDB 2OO6 · PDBe 2OO6 · UniProt Q13PB7

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