Research workbench
High-resolution cryo-EM structure of tobacco mosaic virus
Analyse High-resolution cryo-EM structure of tobacco mosaic virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2OM3
- Type
- protein + RNA
- Length
- 157 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tobacco mosaic virus RNA; Coat protein
- UniProt
- Q77LT8
- Pockets
- 1 · best druggability 0.32
Structure
electron microscopy · 2 distinct chains · 45% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| R | Tobacco mosaic virus RNA | rna | 3 | — | — |
| A | Coat protein | protein | 154 | 45% helix, 6% strand | Q77LT8 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.32 | 0.78 | 13 | empty |
Interfaces
1 interface between chains.
- R–A · 395 Ų buried · 12 hydrogen bonds · protein-nucleic
Compared structures
- 2OM3 · High-resolution cryo-EM structure of Tobacco Mosaic Virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q77LT8
- Elsewhere: RCSB PDB 2OM3 · PDBe 2OM3 · UniProt Q77LT8
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