Research workbench

Flap endonuclease-1 from methanococcus jannaschii

Analyse Flap endonuclease-1 from methanococcus jannaschii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1A77
Type: protein
Length: 315 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flap endonuclease-1 protein
UniProt: Q58839
Ligands: MG
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Flap endonuclease-1 protein	protein	315	44% helix, 10% strand	Q58839

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	277	0.56	0.77	40	MG

Compared structures

1A77 · Flap endonuclease-1 from methanococcus jannaschii · the same entry in another collection · chain A against A, TM-score 1.00
Q58839 · AlphaFold monomer V2.0 prediction for flap endonuclease 1 (Q58839) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58839
Elsewhere: RCSB PDB 1A77 · PDBe 1A77 · UniProt Q58839

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