Research workbench
Crystal structure of human OLA1 in complex with amppcp
Analyse Crystal structure of human OLA1 in complex with amppcp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2OHF
- Type
- protein
- Length
- 327 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GTP-binding protein 9
- UniProt
- Q5BJD7
- Ligands
- ACP
- Pockets
- 5 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GTP-binding protein 9 | protein | 327 | 46% helix, 21% strand | Q5BJD7 |
Ligands and binding sites
- ACP · Phosphomethylphosphonic acid adenylate ester · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 214 | 0.49 | 0.75 | 27 | empty |
| 2 | 73 | 0.37 | 0.77 | 19 | empty |
| 3 | 65 | 0.34 | 0.77 | 19 | empty |
| 4 | 55 | 0.30 | 0.75 | 10 | empty |
| 5 | 53 | 0.26 | 0.73 | 19 | empty |
Compared structures
- 2OHF · Crystal structure of human OLA1 in complex with AMPPCP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5BJD7
- Elsewhere: RCSB PDB 2OHF · PDBe 2OHF · UniProt Q5BJD7
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