Research workbench
Crystal structure of protein AF2318 from archaeglobus fulgidus, pfam DUF54
Analyse Crystal structure of protein AF2318 from archaeglobus fulgidus, pfam DUF54 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2OGK
- Type
- protein
- Length
- 545 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- O27966
- Pockets
- 2 · best druggability 0.79
Structure
x-ray diffraction · 4 distinct chains · 38% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 133 | 42% helix, 28% strand | O27966 |
| B | Hypothetical protein | protein | 139 | 34% helix, 29% strand | O27966 |
| C | Hypothetical protein | protein | 131 | 40% helix, 27% strand | O27966 |
| D | Hypothetical protein | protein | 142 | 37% helix, 32% strand | O27966 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1024 | 0.79 | 0.81 | 88 | empty |
| 2 | 342 | 0.60 | 0.78 | 43 | empty |
Interfaces
4 interfaces between chains.
- B–D · 682 Ų buried · 17 hydrogen bonds · protein-protein
- C–D · 564 Ų buried · 12 hydrogen bonds · protein-protein
- A–D · 308 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 26 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 2OGK · Crystal structure of protein AF2318 from Archaeglobus fulgidus, Pfam DUF54 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O27966
- Elsewhere: RCSB PDB 2OGK · PDBe 2OGK · UniProt O27966
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.