Research workbench
Protein of unknown function (DUF1342) from vibrio parahaemolyticus
Analyse Protein of unknown function (DUF1342) from vibrio parahaemolyticus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2OEZ
- Type
- protein
- Length
- 484 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0289 protein VP2528
- UniProt
- Q87LT3
- Pockets
- 8 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 54% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0289 protein VP2528 | protein | 241 | 55% helix, 20% strand | Q87LT3 |
| B | UPF0289 protein VP2528 | protein | 243 | 53% helix, 20% strand | Q87LT3 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 373 | 0.68 | 0.81 | 31 | empty |
| 2 | 328 | 0.61 | 0.78 | 33 | empty |
| 3 | 350 | 0.61 | 0.78 | 26 | empty |
| 4 | 67 | 0.43 | 0.81 | 17 | empty |
| 5 | 120 | 0.42 | 0.76 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1964 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 2OEZ · Protein of Unknown Function (DUF1342) from Vibrio parahaemolyticus · the same entry in another collection · chain A against A, TM-score 1.00
- Q87LT3 · AlphaFold monomer V2.0 prediction for cell division protein zapd (Q87LT3) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87LT3
- Elsewhere: RCSB PDB 2OEZ · PDBe 2OEZ · UniProt Q87LT3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.