Research workbench
Restriction endonuclease bcni in the absence of DNA
Analyse Restriction endonuclease bcni in the absence of DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2ODH
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- R.BCNI
- UniProt
- Q8RNV8
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | R.BCNI | protein | 233 | 20% helix, 42% strand | Q8RNV8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 361 | 0.58 | 0.76 | 33 | ACT |
| 2 | 52 | 0.28 | 0.74 | 18 | PEG |
Compared structures
- 2ODH · Restriction Endonuclease BCNI in the Absence of DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RNV8
- Elsewhere: RCSB PDB 2ODH · PDBe 2ODH · UniProt Q8RNV8
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