Research workbench
Structure of shh variant of "bergerac" chimera of spectrin SH3
Analyse Structure of shh variant of "bergerac" chimera of spectrin SH3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2OAW
- Type
- protein
- Length
- 260 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spectrin alpha chain, brain
- UniProt
- P07751
- Ligands
- CL
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Spectrin alpha chain, brain | protein | 65 | 5% helix, 57% strand | P07751 |
Ligands and binding sites
- CL · Chloride ion · ion · 9 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.54 | 0.80 | 26 | CL |
| 2 | 81 | 0.39 | 0.78 | 17 | empty |
| 3 | 53 | 0.26 | 0.74 | 11 | empty |
Interfaces
5 interfaces between chains.
- A–B · 481 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 343 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 300 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 280 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 200 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 2OAW · Structure of SHH variant of Bergerac" chimera of spectrin SH3" · the same entry in another collection · chain A against A, TM-score 1.00
- P07751 · AlphaFold monomer V2.0 prediction for spectrin alpha chain, non- erythrocytic 1 (P07751) · a predicted model of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07751
- Elsewhere: RCSB PDB 2OAW · PDBe 2OAW · UniProt P07751
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