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Crystal structure of SRO7 from S. cerevisiae

Analyse Crystal structure of SRO7 from S. cerevisiae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2OAJ
Type: protein
Length: 875 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein SNI1
UniProt: Q12038
Ligands: ZN, NA
Pockets: 10 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein SNI1	protein	875	9% helix, 44% strand	Q12038

Ligands and binding sites

ZN · Zinc ion · metal · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	839	0.81	0.84	60	empty
2	718	0.80	0.84	69	empty
3	771	0.72	0.78	68	NA
4	104	0.61	0.87	21	empty
5	227	0.56	0.78	31	empty

Compared structures

2OAJ · Crystal structure of Sro7 from S. cerevisiae · the same entry in another collection · chain A against A, TM-score 1.00
Q12038 · AlphaFold monomer V2.0 prediction for LETHAL(2) giant larvae protein homolog SRO7 (Q12038) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12038
Elsewhere: RCSB PDB 2OAJ · PDBe 2OAJ · UniProt Q12038

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