Research workbench
Crystal structure of the full length ferric pyoverdine outer membrane receptor fpva of pseudomonas aeruginosa in its apo form
Analyse Crystal structure of the full length ferric pyoverdine outer membrane receptor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2O5P
- Type
- protein
- Length
- 1,526 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferripyoverdine receptor
- UniProt
- P48632
- Ligands
- N8E, PO4
- Pockets
- 16 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferripyoverdine receptor | protein | 772 | 8% helix, 55% strand | P48632 |
| B | Ferripyoverdine receptor | protein | 754 | 8% helix, 56% strand | P48632 |
Ligands and binding sites
- N8E · 3,6,9,12,15-pentaoxatricosan-1-ol · ligand · chains A
- PO4 · Phosphate ion · ion · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 450 | 0.85 | 0.93 | 64 | PO4 |
| 2 | 895 | 0.83 | 0.85 | 129 | PO4 |
| 3 | 709 | 0.76 | 0.82 | 104 | PO4 |
| 4 | 1144 | 0.75 | 0.78 | 85 | empty |
| 5 | 1073 | 0.75 | 0.78 | 89 | empty |
Interfaces
1 interface between chains.
- A–B · 689 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 2O5P · Crystal structure of the full length ferric pyoverdine outer membrane receptor FpvA of… · the same entry in another collection · chain A against A, TM-score 1.00
- P48632 · AlphaFold monomer V2.0 prediction for ferripyoverdine receptor (P48632) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P48632
- Elsewhere: RCSB PDB 2O5P · PDBe 2O5P · UniProt P48632
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