Research workbench
Crystal structure of Q9KD89 from bacillus halodurans. northeast structural genomics target BHR21
Analyse Crystal structure of Q9KD89 from bacillus halodurans. northeast structural… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2O5A
- Type
- protein
- Length
- 213 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BH1328 protein
- UniProt
- Q9KD89
- Ligands
- MN, SO4
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | BH1328 protein | protein | 108 | 31% helix, 30% strand | Q9KD89 |
| B | BH1328 protein | protein | 105 | 29% helix, 30% strand | Q9KD89 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 247 | 0.63 | 0.81 | 38 | empty |
Interfaces
1 interface between chains.
- A–B · 901 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 2O5A · Crystal structure of Q9KD89 from Bacillus halodurans. Northeast Structural Genomics… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9KD89 · AlphaFold monomer V2.0 prediction for ribosomal silencing factor rsfs (Q9KD89) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KD89
- Elsewhere: RCSB PDB 2O5A · PDBe 2O5A · UniProt Q9KD89
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