Research workbench
Crystal structure of RV1404 from mycobacterium tuberculosis
Analyse Crystal structure of RV1404 from mycobacterium tuberculosis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2NYX
- Type
- protein
- Length
- 586 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable transcriptional regulatory protein, RV1404
- UniProt
- P71672
- Pockets
- 7 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 66% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Probable transcriptional regulatory protein, RV1404 | protein | 146 | 68% helix, 8% strand | P71672 |
| B, D | Probable transcriptional regulatory protein, RV1404 | protein | 147 | 64% helix, 7% strand | P71672 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 327 | 0.66 | 0.81 | 39 | empty |
| 2 | 361 | 0.65 | 0.79 | 35 | empty |
| 3 | 121 | 0.55 | 0.83 | 29 | empty |
| 4 | 275 | 0.52 | 0.75 | 29 | empty |
| 5 | 78 | 0.36 | 0.76 | 20 | empty |
Interfaces
3 interfaces between chains.
- C–D · 3247 Ų buried · 28 hydrogen bonds · protein-protein
- A–B · 3183 Ų buried · 29 hydrogen bonds · protein-protein
- B–C · 493 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 2NYX · Crystal structure of RV1404 from Mycobacterium tuberculosis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71672
- Elsewhere: RCSB PDB 2NYX · PDBe 2NYX · UniProt P71672
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