Research workbench
Apo-form of T. thermophilus ribosomal protein L11 methyltransferase (prma)
Analyse Apo-form of T. thermophilus ribosomal protein L11 methyltransferase (prma) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2NXC
- Type
- protein
- Length
- 249 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal protein L11 methyltransferase
- EC
- 2.1.1.-
- UniProt
- Q84BQ9
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal protein L11 methyltransferase (EC 2.1.1.-) | protein | 249 | 37% helix, 33% strand | Q84BQ9 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.49 | 0.77 | 28 | empty |
| 2 | 126 | 0.44 | 0.76 | 16 | empty |
Compared structures
- 2NXC · Apo-form of T. thermophilus ribosomal protein L11 methyltransferase (PrmA) · the same entry in another collection · chain A against A, TM-score 1.00
- Q84BQ9 · AlphaFold monomer V2.0 prediction for ribosomal protein L11 methyltransferase (Q84BQ9) · a predicted model of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84BQ9
- Elsewhere: RCSB PDB 2NXC · PDBe 2NXC · UniProt Q84BQ9
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