Research workbench
Crystal structure of protein AF1396 from archaeoglobus fulgidus, pfam DUF98
Analyse Crystal structure of protein AF1396 from archaeoglobus fulgidus, pfam DUF98 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2NWI
- Type
- protein
- Length
- 952 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- O28875
- Pockets
- 7 · best druggability 0.85
Structure
x-ray diffraction · 3 distinct chains · 32% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D, E | Hypothetical protein | protein | 160 | 33% helix, 43% strand | O28875 |
| B | Hypothetical protein | protein | 153 | 31% helix, 44% strand | O28875 |
| F | Hypothetical protein | protein | 159 | 33% helix, 42% strand | O28875 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 882 | 0.85 | 0.87 | 73 | empty |
| 2 | 910 | 0.84 | 0.86 | 88 | empty |
| 3 | 935 | 0.84 | 0.85 | 83 | empty |
| 4 | 535 | 0.79 | 0.86 | 71 | empty |
| 5 | 127 | 0.47 | 0.78 | 21 | empty |
Interfaces
10 interfaces between chains.
- A–B · 989 Ų buried · 19 hydrogen bonds · protein-protein
- C–D · 972 Ų buried · 17 hydrogen bonds · protein-protein
- E–F · 945 Ų buried · 17 hydrogen bonds · protein-protein
- A–C · 398 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 247 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 2NWI · Crystal structure of protein AF1396 from Archaeoglobus fulgidus, Pfam DUF98 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O28875
- Elsewhere: RCSB PDB 2NWI · PDBe 2NWI · UniProt O28875
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.