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Dd homodimer

Analyse Dd homodimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2N97
Type: protein
Length: 188 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tumor necrosis factor receptor superfamily member 16
UniProt: P08138
Pockets: 3 · best druggability 0.74

Structure

solution nmr · 1 distinct chain · 64% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Tumor necrosis factor receptor superfamily member 16	protein	94	64% helix, 2% strand	P08138

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.74	0.96	18	empty
2	113	0.71	0.91	24	empty
3	78	0.69	0.94	26	empty

Interfaces

1 interface between chains.

A–B · 604 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

2N97 · DD homodimer · the same entry in another collection · chain A against A, TM-score 1.00
P08138 · AlphaFold monomer V2.0 prediction for tumor necrosis factor receptor superfamily member… · a predicted model of the same protein · chain A against A, TM-score 0.83

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08138
Elsewhere: RCSB PDB 2N97 · PDBe 2N97 · UniProt P08138

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