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An NMR/SAXS structure of the pki domain of the honeybee dicistrovirus, israeli acute paralysis virus (iapv) ires

Analyse An NMR/SAXS structure of the pki domain of the honeybee dicistrovirus, israeli… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2N8V
Type: RNA
Length: 70 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (70-mer)
Pockets: 2 · best druggability 0.51

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	RNA (70-mer)	rna	70	—	—

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	237	0.51	0.76	18	empty
2	205	0.45	0.75	14	empty

Compared structures

2N8V · An NMR/SAXS structure of the PKI domain of the honeybee dicistrovirus, Israeli acute… · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2N8V · PDBe 2N8V

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