Research workbench
Universal base oligonucleotide structure
Analyse Universal base oligonucleotide structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2N5O
- Type
- DNA
- Length
- 18 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA_(5'-D(*AP*TP*GP*GP*(4EN)P*GP*CP*TP*C)-3'); DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3')
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA_(5'-D(*AP*TP*GP*GP*(4EN)P*GP*CP*TP*C)-3') | dna | 9 | — | — |
| B | DNA_(5'-D(*GP*AP*GP*CP*TP*CP*CP*AP*T)-3') | dna | 9 | — | — |
Interfaces
1 interface between chains.
- A–B · 398 Ų buried · 34 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 2N5O · Universal Base oligonucleotide structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2N5O · PDBe 2N5O
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