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Solution structure of BUD31P

Analyse Solution structure of BUD31P in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2MY1
Type: protein
Length: 159 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pre-mRNA-splicing factor BUD31
UniProt: P25337
Ligands: ZN
Pockets: 2 · best druggability 0.35

Structure

solution nmr · 1 distinct chain · 47% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pre-mRNA-splicing factor BUD31	protein	159	47% helix, 1% strand	P25337

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.35	0.75	19	empty
2	75	0.34	0.75	13	empty

Compared structures

2MY1 · Solution structure of Bud31p · the same entry in another collection · chain A against A, TM-score 1.00
P25337 · AlphaFold monomer V2.0 prediction for pre-mRNA-splicing factor BUD31 (P25337) · a predicted model of the same protein · chain A against A, TM-score 0.67

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P25337
Elsewhere: RCSB PDB 2MY1 · PDBe 2MY1 · UniProt P25337

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