Research workbench
Full-length solution structure of ytva, a lov-photoreceptor protein and regulator of bacterial stress response
Analyse Full-length solution structure of ytva, a lov-photoreceptor protein and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MWG
- Type
- protein
- Length
- 522 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Blue-light photoreceptor
- UniProt
- O34627
- Ligands
- FMN
- Pockets
- 7 · best druggability 0.79
Structure
solution nmr · 1 distinct chain · 47% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Blue-light photoreceptor | protein | 261 | 47% helix, 20% strand | O34627 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 730 | 0.79 | 0.83 | 75 | empty |
| 2 | 705 | 0.75 | 0.80 | 57 | empty |
| 3 | 424 | 0.73 | 0.83 | 45 | empty |
| 4 | 270 | 0.69 | 0.84 | 36 | FMN |
| 5 | 248 | 0.67 | 0.83 | 29 | FMN |
Interfaces
1 interface between chains.
- A–B · 1895 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 2MWG · Full-Length Solution Structure Of YtvA, a LOV-Photoreceptor Protein and Regulator of… · the same entry in another collection · chain A against A, TM-score 1.00
- O34627 · AlphaFold monomer V2.0 prediction for blue-light photoreceptor (O34627) · a predicted model of the same protein · chain A against A, TM-score 0.56
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34627
- Elsewhere: RCSB PDB 2MWG · PDBe 2MWG · UniProt O34627
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