Research workbench
Noe-based model of the influenza a virus M2 (19-49) bound to drug 11
Analyse Noe-based model of the influenza a virus M2 (19-49) bound to drug 11 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MUV
- Type
- protein
- Length
- 124 residues
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein 2
- UniProt
- B0LX40
- Ligands
- 3LW
- Pockets
- 1 · best druggability 0.83
Structure
solution nmr · 1 distinct chain · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Matrix protein 2 | protein | 31 | 74% helix, 0% strand | B0LX40 |
Ligands and binding sites
- 3LW · (3s,5s,7s)-N-[(5-bromothiophen-2-yl)methyl]tricyclo[3.3.1.1~3,7~]decan-1-aminium · ligand · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 888 | 0.83 | 0.85 | 75 | 3LW |
Interfaces
4 interfaces between chains.
- C–D · 483 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 473 Ų buried · 1 hydrogen bond · protein-protein
- A–B · 473 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 467 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 2MUV · NOE-based model of the influenza A virus M2 (19-49) bound to drug 11 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0LX40
- Elsewhere: RCSB PDB 2MUV · PDBe 2MUV · UniProt B0LX40
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