Research workbench
Solution structure of the yth domain of YT521-B in complex with N6- methyladenosine containing RNA
Analyse Solution structure of the yth domain of YT521-B in complex with N6… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MTV
- Type
- protein + RNA
- Length
- 162 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yth domain-containing protein 1; RNA_(5'-R(*UP*GP*(6MZ)P*CP*AP*C)-3')
- UniProt
- Q9QY02
Structure
solution nmr · 2 distinct chains · 31% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yth domain-containing protein 1 | protein | 156 | 31% helix, 21% strand | Q9QY02 |
| B | RNA_(5'-R(*UP*GP*(6MZ)P*CP*AP*C)-3') | rna | 6 | — | — |
Interfaces
1 interface between chains.
- A–B · 794 Ų buried · 21 hydrogen bonds · protein-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 2MTV · Solution Structure of the YTH Domain of YT521-B in complex with N6-Methyladenosine… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9QY02 · AlphaFold monomer V2.0 prediction for yth domain-containing protein 1 (Q9QY02) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9QY02
- Elsewhere: RCSB PDB 2MTV · PDBe 2MTV · UniProt Q9QY02
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