Research workbench

NMR structure of the III-IV-V three-way junction from the vs ribozyme and identification of magnesium-binding sites using paramagnetic relaxation enhancement

Analyse NMR structure of the III-IV-V three-way junction from the vs ribozyme and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2MTK
Type: RNA
Length: 47 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (47-mer)
Ligands: MG
Pockets: 1 · best druggability 0.42

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (47-mer)	rna	47	—	—

Ligands and binding sites

MG · Magnesium ion · metal · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	215	0.42	0.73	20	MG

Compared structures

2MTK · NMR structure of the III-IV-V three-way junction from the VS ribozyme and identification… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2MTK · PDBe 2MTK

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.