Research workbench
Structural dynamics of double-helical RNA having cag motif
Analyse Structural dynamics of double-helical RNA having cag motif in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MS5
- Type
- RNA
- Length
- 18 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA_(5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')
- Pockets
- 1 · best druggability 0.32
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| S, A | RNA_(5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3') | rna | 9 | — | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.32 | 0.72 | 13 | empty |
Interfaces
1 interface between chains.
- S–A · 451 Ų buried · 38 hydrogen bonds · nucleic-nucleic
Compared structures
- 2MS5 · Structural dynamics of double-helical RNA having CAG motif · the same entry in another collection · chain S against S, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2MS5 · PDBe 2MS5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.