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A tetrahelical DNA fold adopted by alternating ggg and gcg tracts

Analyse A tetrahelical DNA fold adopted by alternating ggg and gcg tracts in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2MJJ
Type: DNA
Length: 30 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*G)-3'
Pockets: 1 · best druggability 0.59

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-D(GPGPGPAPGPCPGPAPGPGPGPAPGPCP*G)-3'	dna	15	—	—

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	404	0.59	0.76	29	empty

Interfaces

1 interface between chains.

A–B · 807 Å² buried · 65 hydrogen bonds · nucleic-nucleic

Compared structures

2MJJ · A tetrahelical DNA fold adopted by alternating GGG and GCG tracts · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2MJJ · PDBe 2MJJ

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