Research workbench
NMR structure of the chicken CD3 epsilon DELTA/GAMMA heterodimer
Analyse NMR structure of the chicken CD3 epsilon DELTA/GAMMA heterodimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MIM
- Type
- protein
- Length
- 178 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CD3 epsilon PROTEIN,CD3 glycoprotein
- UniProt
- P70069, Q90768
- Pockets
- 5 · best druggability 0.59
Structure
solution nmr · 1 distinct chain · 2% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CD3 epsilon PROTEIN,CD3 glycoprotein | protein | 178 | 2% helix, 26% strand | P70069, Q90768 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 141 | 0.59 | 0.83 | 22 | empty |
| 2 | 50 | 0.47 | 0.85 | 18 | empty |
| 3 | 58 | 0.46 | 0.84 | 15 | empty |
| 4 | 98 | 0.38 | 0.76 | 19 | empty |
| 5 | 68 | 0.29 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2MIM · NMR structure of the chicken CD3 epsilon delta/gamma heterodimer · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P70069
- Every structure of UniProt Q90768
- Elsewhere: RCSB PDB 2MIM · PDBe 2MIM · UniProt P70069 · UniProt Q90768
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.