Research workbench
NMR structure of the S-linked glycopeptide sublancin 168
Analyse NMR structure of the S-linked glycopeptide sublancin 168 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MIJ
- Type
- protein
- Length
- 37 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SPBC2 prophage-derived bacteriocin sublancin-168
- UniProt
- P68577
- Ligands
- BGC
Structure
solution nmr · 1 distinct chain · 43% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SPBC2 prophage-derived bacteriocin sublancin-168 | protein | 37 | 43% helix, 0% strand | P68577 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 disulfide, 1 glycan (disulfide, glycosylation).
Compared structures
- 2MIJ · NMR structure of the S-linked glycopeptide sublancin 168 · the same entry in another collection · chain A against A, TM-score 1.00
- P68577 · AlphaFold monomer V2.0 prediction for spbeta prophage-derived bacteriocin sublancin-168… · a predicted model of the same protein · chain A against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68577
- Elsewhere: RCSB PDB 2MIJ · PDBe 2MIJ · UniProt P68577
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