Research workbench
Structure of exocyclic R,R N6,N6-(2,3-dihydroxy-1,4-butadiyl)-2'- deoxyadenosine adduct induced by 1,2,3,4-diepoxybutane in DNA
Analyse Structure of exocyclic R,R N6,N6-(2,3-dihydroxy-1,4-butadiyl)-2'… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2MHX
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*GP*AP*CP*(RBD)P*AP*GP*AP*AP*G)-3'); 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3')
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*GP*GP*AP*CP*(RBD)P*AP*GP*AP*AP*G)-3') | dna | 11 | — | — |
| B | 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3') | dna | 11 | — | — |
Interfaces
1 interface between chains.
- A–B · 532 Ų buried · 50 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 2MHX · Structure of Exocyclic R,R N6,N6-(2,3-Dihydroxy-1,4-butadiyl)-2'-Deoxyadenosine Adduct… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2MHX · PDBe 2MHX
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