Research workbench

E. COLI lpoa N-terminal domain

Analyse E. COLI lpoa N-terminal domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2MHK
Type: protein
Length: 250 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Penicillin-binding protein activator lpoa
UniProt: P45464
Pockets: 1 · best druggability 0.42

Structure

solution nmr · 1 distinct chain · 54% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Penicillin-binding protein activator lpoa	protein	250	54% helix, 0% strand	P45464

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	150	0.42	0.75	25	empty

Compared structures

2MHK · E. coli LpoA N-terminal domain · the same entry in another collection · chain A against A, TM-score 1.00
P45464 · AlphaFold monomer V2.0 prediction for penicillin-binding protein activator lpoa (P45464) · a predicted model of the same protein · chain A against A, TM-score 0.74

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P45464
Elsewhere: RCSB PDB 2MHK · PDBe 2MHK · UniProt P45464

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